Scientists at Stanford are believed to be the first to have discovered a biomarker that can predict who will be most susceptible to influenza.
Researchers at the Stanford University School of Medicine have found a way to predict whether someone exposed to the flu virus is likely to become ill.
Purvesh Khatri, PhD, associate professor of medicine and of biomedical data science, and his team used a computational approach to pinpoint a blood-based genetic biomarker to determine an individual’s susceptibility to the disease.
“We’ve been after this for about four years,” Khatri said. “To our knowledge, it’s the first biomarker that shows susceptibility to influenza, across multiple strains.”
The biomarker is a gene called KLRD1, and it essentially acts as a proxy for the presence of a special type of immune cell that may be a key to stamping out nascent flu infection. Put simply: the more of this cell type found in a person’s blood, the lower their flu susceptibility. The research even hints at new avenues for pursuing a broadly applicable flu vaccine.
A paper describing the work will be published online June 14 in Genome Medicine. Khatri is the senior author. Graduate student Erika Bongen is the lead author.
The secret’s in the cell type
At the start of their study, Khatri and his group ran gene expression analyses that sifted through the collection of human genes, looking for a sign that one might be particularly important for fighting off the flu. But the sheer number of genes in a small number of samples overshadowed any potential signal, so Khatri turned to a different approach that repurposed immune cell data collected from more than 150 studies that monitored gene expression in the immune cells of more than 6,000 samples.
“The idea was, instead of looking at 20,000 variables [or genes], let’s bring it down to 20 ¾ let’s only look at 20 immune cell types and see if any of these shows a consistent pattern in regard to H1N1 or H3N2 flu infection, and then we’ll look at genes that are related to that cell type only,” Khatri said. “And that turned out to be the answer.”
Using a computational approach developed in his lab, Khatri and his team parsed the identity and proportion of cells present in participants of two studies — one conducted at Harvard University, the other at Duke University — comprising a total of 52 individuals who volunteered to sniff up live influenza in the name of science. The researchers were looking only at types of immune cells present in each individual just before they were infected with the flu.
“We found that a type of immune cell called a natural killer cell was consistently low at baseline in individuals who got infected,” Bongen said. Those who had a higher proportion of natural killer cells had better immune defenses and fought off illness.
“So we asked, ‘What are the genes that represent natural killer cells?’ And there turned out to be this one gene, KLRD1, that seemed to be a good target,” Bongen said.
Old data, new tricks
KLRD1, when expressed, manifests as a receptor on the surface of natural killer cells. KLRD1 is basically a counting chip. When the score was tallied, Khatri saw that, on the whole, those whose immune cells consisted of 10-13 percent natural killers did not succumb to the flu, whereas those whose natural killer cells fell short of 10 percent wound up ill. It’s a fine line, Khatri said, but the distinction between the groups is quite clear: Everyone who had 10 percent or more natural killer cells stood strong against the infection and showed no symptoms.
Khatri said his findings could help health professionals understand who’s at the highest risk for flu infection. “If, for example, there’s a flu epidemic going on, and Tamiflu supplies are limited, this data could help identify who should be prophylactically treated first,” Khatri said.
Khatri emphasizes that for now, the link between KLRD1 levels and influenza susceptibility is only an association. The next step, he said, is to find the mechanism.
“It will be crucial to understand the role of natural killer cells’ protection so that we can potentially leverage that in designing better flu vaccines,” he said. “Since we see that natural killer cells are protective across different strains, maybe that would be a path to a universal flu vaccine.”
More broadly, Khatri said that this research exemplifies the power of “data repurposing.”
“Our work shows how you can use data that exists from previous studies to answer questions that those studies alone would not have been able to answer,” Khatri said. “But by aggregating the data, we were able to find a signal across both studies and use that to discover something new.”
The Latest on: Influenza
via Google News
The Latest on: Influenza
- Life-saving vaccine scientist's 100th birthday celebratedon September 7, 2019 at 3:13 am
He would grow up to develop vaccines against measles, mumps, chickenpox, pneumonia, influenza, meningitis and hepatitis and other diseases. Hilleman is credited with saving tens of millions of lives ...
- Disrupting the gut microbiome may affect some immune responses to flu vaccinationon September 6, 2019 at 4:50 pm
Researchers have now found that oral antibiotics, which can kill gut microorganisms, can alter the human immune response to seasonal influenza vaccination. The normal human gut microbiome is a ...
- Patterns of seasonal and pandemic influenza-associated health care and mortality in Ontario, Canadaon September 6, 2019 at 7:01 am
Mathematical and statistical models are used to project the future time course of infectious disease epidemics and the expected future burden on health care systems and economies. Influenza is a ...
- Detection of influenza virus by agglutination using nanoparticles conjugated with a sialic acid-mimic peptideon September 5, 2019 at 10:29 pm
Influenza virus (IFV) detection in the early phase of disease is critical for effective anti-influenza therapy using neuraminidase inhibitors. Sialyloligosaccharide receptors on the surface of ...
- Avian Influenza Vaccines Sales Market 2019 Outlook, Opportunity and Demand Analysis Report by 2024on September 5, 2019 at 7:54 am
Sep 05, 2019 (Heraldkeepers) -- New York, September 05, 2019: Market Research Engine has published a new report titled as "Avian Influenza Vaccines Sales Market By Application (Chicken, Duck & ...
- Influenza Diagnostics Market 2019 Global Industry Share, Size Estimation, Demand, Trend, Challenges, Comprehensive Insights, Future Forecasts To 2023on September 4, 2019 at 6:25 pm
The Global Influenza Diagnostics Market is Expected to Register a CAGR of 7.80% to reach USD 954.512 million by 2023. The key players identified in the global influenza diagnostics market are Abbott, ...
- Structures of influenza A virus RNA polymerase offer insight into viral genome replicationon September 4, 2019 at 10:07 am
Fig. 2: Mutations at the interface of the FluPol A dimer inhibit cRNA to vRNA replication. Fig. 3: Structures of H3N2 FluPol A bound to cRNA promoter. Fig. 4: Nb8205, which binds FluPol A at the dimer ...
- Cocrystal Pharma Presents Positive Preclinical Data for CC-42344 at the Options X for the Control of Influenza Conferenceon September 3, 2019 at 5:05 am
- CC-42344 showed broad spectrum activity, excellent anti-influenza activity (EC50
- Seasonal Influenza Vaccine Market Size Research Report | Growth Forecast 2025on September 2, 2019 at 6:22 am
Sep 02, 2019 (AmericaNewsHour) -- Seasonal Influenza Vaccine Market is expected to reach more than US$ 4 Billion across the seven major markets (7MM) of the United States, France, Germany, Italy, ...
via Bing News