Scientists at Stanford are believed to be the first to have discovered a biomarker that can predict who will be most susceptible to influenza.
Researchers at the Stanford University School of Medicine have found a way to predict whether someone exposed to the flu virus is likely to become ill.
Purvesh Khatri, PhD, associate professor of medicine and of biomedical data science, and his team used a computational approach to pinpoint a blood-based genetic biomarker to determine an individual’s susceptibility to the disease.
“We’ve been after this for about four years,” Khatri said. “To our knowledge, it’s the first biomarker that shows susceptibility to influenza, across multiple strains.”
The biomarker is a gene called KLRD1, and it essentially acts as a proxy for the presence of a special type of immune cell that may be a key to stamping out nascent flu infection. Put simply: the more of this cell type found in a person’s blood, the lower their flu susceptibility. The research even hints at new avenues for pursuing a broadly applicable flu vaccine.
A paper describing the work will be published online June 14 in Genome Medicine. Khatri is the senior author. Graduate student Erika Bongen is the lead author.
The secret’s in the cell type
At the start of their study, Khatri and his group ran gene expression analyses that sifted through the collection of human genes, looking for a sign that one might be particularly important for fighting off the flu. But the sheer number of genes in a small number of samples overshadowed any potential signal, so Khatri turned to a different approach that repurposed immune cell data collected from more than 150 studies that monitored gene expression in the immune cells of more than 6,000 samples.
“The idea was, instead of looking at 20,000 variables [or genes], let’s bring it down to 20 ¾ let’s only look at 20 immune cell types and see if any of these shows a consistent pattern in regard to H1N1 or H3N2 flu infection, and then we’ll look at genes that are related to that cell type only,” Khatri said. “And that turned out to be the answer.”
Using a computational approach developed in his lab, Khatri and his team parsed the identity and proportion of cells present in participants of two studies — one conducted at Harvard University, the other at Duke University — comprising a total of 52 individuals who volunteered to sniff up live influenza in the name of science. The researchers were looking only at types of immune cells present in each individual just before they were infected with the flu.
“We found that a type of immune cell called a natural killer cell was consistently low at baseline in individuals who got infected,” Bongen said. Those who had a higher proportion of natural killer cells had better immune defenses and fought off illness.
“So we asked, ‘What are the genes that represent natural killer cells?’ And there turned out to be this one gene, KLRD1, that seemed to be a good target,” Bongen said.
Old data, new tricks
KLRD1, when expressed, manifests as a receptor on the surface of natural killer cells. KLRD1 is basically a counting chip. When the score was tallied, Khatri saw that, on the whole, those whose immune cells consisted of 10-13 percent natural killers did not succumb to the flu, whereas those whose natural killer cells fell short of 10 percent wound up ill. It’s a fine line, Khatri said, but the distinction between the groups is quite clear: Everyone who had 10 percent or more natural killer cells stood strong against the infection and showed no symptoms.
Khatri said his findings could help health professionals understand who’s at the highest risk for flu infection. “If, for example, there’s a flu epidemic going on, and Tamiflu supplies are limited, this data could help identify who should be prophylactically treated first,” Khatri said.
Khatri emphasizes that for now, the link between KLRD1 levels and influenza susceptibility is only an association. The next step, he said, is to find the mechanism.
“It will be crucial to understand the role of natural killer cells’ protection so that we can potentially leverage that in designing better flu vaccines,” he said. “Since we see that natural killer cells are protective across different strains, maybe that would be a path to a universal flu vaccine.”
More broadly, Khatri said that this research exemplifies the power of “data repurposing.”
“Our work shows how you can use data that exists from previous studies to answer questions that those studies alone would not have been able to answer,” Khatri said. “But by aggregating the data, we were able to find a signal across both studies and use that to discover something new.”
The Latest on: Influenza
via Google News
The Latest on: Influenza
- Labor calls on Tasmanian government to release winter plan, as influenza cases increase on April 17, 2019 at 8:00 pm
Labor is calling on the state government to reveal details of how it plans to deal with increased demand on hospitals during flu season. So far this year there have been 448 of reported cases of ... […]
- Influenza Medication Market Analysis & Forecast 2019| Daiichi Sankyo Company, GlaxoSmithKline, Natco Pharma, F. Hoffmann-La Roche on April 17, 2019 at 4:05 pm
The report on the global Influenza Medication market is comprehensively prepared with main focus on the competitive landscape, geographical growth, segmentation, and market dynamics, including drivers ... […]
- Five more people die from influenza in San Diego this season on April 17, 2019 at 3:42 pm
SAN DIEGO (KGTV) — Five more people died from the flu in San Diego last week. The new deaths, ranging in people aged from 47- to 77-years-old, all had underlying health conditions, according to the ... […]
- Flutracking starts early in 2019 after influx of influenza cases reported on April 17, 2019 at 3:00 pm
Flu season is expected to be between two and three times higher than normal in Australia this year. In fact, flu activity this year has already exceeded that of last winter, Dr Craig Dalton. Flue ... […]
- Mauritius: Anti-Influenza Vaccination Exercise for Winter 2019 Kicks Off on April 17, 2019 at 6:55 am
The annual anti-influenza vaccination exercise for the winter season 2019 kicked off today at the Bambous Social Welfare Centre in the presence of the Minister of Social Security, National ... […]
- Mystery illness at Perak school turns out to be Influenza A(H1N1) on April 17, 2019 at 3:21 am
IPOH (Bernama): Claims of a mysterious illness in Sekolah Tuanku Abdul Rahman (STAR) here that went viral on social media Tuesday (April 16) are not true as it is just an Influenza A(H1N1) infection, ... […]
- Swine Influenza Vaccines 2019 Global Trends, Market Size, Share, Status, SWOT Analysis and Forecast to 2025 on April 17, 2019 at 12:42 am
The global Swine Influenza Vaccines market is valued at million US$ in 2018 and will reach million US$ by the end of 2025, growing at a CAGR of during 2019-2025. The objectives of this study are to ... […]
- Global Swine Influenza Vaccines Market Prospective Growth, Opportunities, Top Key Players and Forecast to 2025 on April 17, 2019 at 12:35 am
Apr 17, 2019 (Heraldkeeper via COMTEX) -- WiseGuyRerports.com Presents "Global Swine Influenza Vaccines Market Insights, Forecast to 2025" New Document to its Studies Database The global Swine ... […]
- Seqirus Announces Further Advances in Cell-Based Influenza Vaccine Technology on April 15, 2019 at 5:30 am
SUMMIT, N.J., April 15, 2019 /PRNewswire/ -- Seqirus, a leading innovator in influenza protection, today announced it will file an Annual Strain Update with the U.S. Food and Drug Administration (FDA) ... […]
via Bing News